| MirGeneDB ID | Npo-Mir-2-o20 |
|---|---|
| Family name | MIR-2 (all species) |
| Seed | CACAGCC |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-2-o21 Npo-Mir-2-o22f Npo-Mir-2-o22g Npo-Mir-2-o23 Npo-Mir-2-o24 |
| Orthologues | Esc-Mir-2-o20-v1 Esc-Mir-2-o20-v2 Obi-Mir-2-o20-v1 Obi-Mir-2-o20-v2 Ovu-Mir-2-o20-v1 Ovu-Mir-2-o20-v2 |
| Node of Origin (locus) | Cephalopoda |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409573-409633 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGUUGCAGAGAGGUUUGCUGUCUACACGGGCGUCAAUGCUGGAUGUAAUAGUAUUUAGUGGAGAACCUAUCACAGCCAGCUUUGAUGAGCCAUGUUCACUGGCAAGUUCAACCACGAAGAGet precursor sequence |
| Structure | 10 20 30 40 50 GUGUUGCAGAGAGGUUUGCU- CU C G-| U A A GUAUUUAG GU ACA GG CGUCAA GCUGG UGU AUA \ CA UGU CC GUAGUU CGACC ACA UAU U AGAAGCACCAACUUGAACGGU CU A GA^ U G C CCAAGAGG . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Npo-Mir-2-o20_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCGUCAAUGCUGGAUGUAAUA -21
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|
| Mature sequence | Npo-Mir-2-o20_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- UCACAGCCAGCUUUGAUGAGC -61
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|
