MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-181-P1a  Cmi-Mir-181-P1b  Cmi-Mir-181-P1c  Cmi-Mir-181-P2a  Cmi-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636034.1: 193682-193742 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUGCAGUUAUCAGUGAAAGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGAAUUGUUAGAAAACUCGCUGACCAAUGAAUGGAACUGUGGCUGGAUCACACAGCUUUCGCUCAA
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Structure
        10        20          30        40        50        60 
UGCCUGCAGUUAUCAGUGAA--|      AUCAA         CU           GUGAAU 
                      AGUCACA     CAUUCAUUG  GUCGGUGGGUU      U
                      UCGGUGU     GUAAGUAAC  CAGUCGCUCAA      G
AACUCGCUUUCGACACACUAGG^      CAAG-         --           AAGAUU 
 .       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-181-P2c_5p
mirBase accessionNone
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Cmi-Mir-181-P2c_3p*
mirBase accessionNone
Sequence 
40- CUCGCUGACCAAUGAAUGGAA -61
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