MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-181-P2c1-v2

Family name MIR-181 (all species)
Seed CAUUCAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-181-P1a1  Tni-Mir-181-P1b1  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2  Tni-Mir-181-P2a1  Tni-Mir-181-P2b1  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Sto-Mir-181-P2c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15: 5125604-5125663 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCUGGCAGAGACCAAAGGUCACAGUCAACAUUCAUUGCUGUCGCUGGGUUGGACUGUGUAGAAAAGCUCACUGAACAAUGAGUGCAACUGUGGCCCAGAUCUGCCCAACUCUUGUCU
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Structure
        10           20        30        40        50        60
GCUGCUGGCAGAGACCAAA---|        CAA         CUG   C      GGACUG 
                      GGUCACAGU   CAUUCAUUG   UCG UGGGUU      U
                      CCGGUGUCA   GUGAGUAAC   AGU ACUCGA      G
UCUGUUCUCAACCCGUCUAGAC^        AC-         A--   C      AAAGAU 
.       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-181-P2c1-v2_5p
mirBase accessionNone
Sequence 
0- ACAUUCAUUGCUGUCGCUGGGUU -23
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Star sequence

Tni-Mir-181-P2c1-v2_3p*
mirBase accessionNone
Sequence 
39- CUCACUGAACAAUGAGUGCAA -60
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