Mir-181-P2c1-v1

MirGeneDB ID

Tni-Mir-181-P2c1-v1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-181-P1a1 Tni-Mir-181-P1b1 Tni-Mir-181-P1c1 Tni-Mir-181-P1c2 Tni-Mir-181-P2a1 Tni-Mir-181-P2b1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Hsa-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Sto-Mir-181-P2c

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

15: 5125603-5125664 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCUGCUGGCAGAGACCAAAGGUCACAGUCAACAUUCAUUGCUGUCGCUGGGUUGGACUGUGUAGAAAAGCUCACUGAACAAUGAGUGCAACUGUGGCCCAGAUCUGCCCAACUCUUGUCUC

Get precursor sequence

Structure

        10        20           30        40        50        60 
CGCUGCUGGCAGAGACCAAA---|        CAA         CUG   C     UGGACUG 
                       GGUCACAGU   CAUUCAUUG   UCG UGGGU       U
                       CCGGUGUCA   GUGAGUAAC   AGU ACUCG       G
CUCUGUUCUCAACCCGUCUAGAC^        AC-         A--   C     AAAAGAU 
120       110       100        90         80          70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-181-P2c1-v1_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGCUGGGU -23

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Star sequence

Tni-Mir-181-P2c1-v1_3p*

mirBase accession

None

Sequence

41- UCACUGAACAAUGAGUGCAAC -62

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