Mir-181-P2c2

MirGeneDB ID

Tni-Mir-181-P2c2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-181-P1a1 Tni-Mir-181-P1b1 Tni-Mir-181-P1c1 Tni-Mir-181-P1c2 Tni-Mir-181-P2a1 Tni-Mir-181-P2b1 Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c2 Ete-Mir-181-P2c Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Sto-Mir-181-P2c

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

Un_random: 58987909-58987968 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUUUUCCUGUAACUGCGGGACUCCGGUUCACAUUCAUCGCUGUCGGUGGGUUGGUGAUGCUGUCAGCUCGCCGGUCGAUGAAUGACCACCGUGUCCGCGCACGGCUACGCUUCUUCUG

Get precursor sequence

Structure

        10           20        30        40        50        60
GUGUUUUCCUGUAACUG--  -|   UC    UCA         CUG         UGGUGA 
                   CG GGAC  CGGU   CAUUCAUCG   UCGGUGGGU      U
                   GC CCUG  GCCA   GUAAGUAGC   GGCCGCUCG      G
GUCUUCUUCGCAUCGGCAC  G^   U-    CCA         U--         ACUGUC 
.       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-181-P2c2_5p

mirBase accession

None

Sequence

0- CACAUUCAUCGCUGUCGGUGGGU -23

Get sequence

Star sequence

Tni-Mir-181-P2c2_3p*

mirBase accession

None

Sequence

39- UCGCCGGUCGAUGAAUGACCA -60

Get sequence