Mir-181-P1b

MirGeneDB ID

Cmi-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-181-P1a Cmi-Mir-181-P1c Cmi-Mir-181-P2a Cmi-Mir-181-P2b Cmi-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cli-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636038.1: 924893-924955 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCAGUAUUUGCUUUCUGGUGGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGUGCUUUUCAGAUUAAACCAUCGAUCGUUGUCUGUACCUUGAGUUCAUCACUAACAUGCUUCAAAAGU

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Structure

        10          20        30        40        50        60  
AUCAGUAUUUGCUUUCU--|   GC     UGA   UU     CU       A    GUGCUU 
                   GGUG  UUCAG   ACA  CAACG  GUCGGUG GUUU      U
                   CUAC  GAGUU   UGU  GUUGC  UAGCUAC CAAA      U
UGAAAACUUCGUACAAUCA^   UU     CCA   CU     --       -    UUAGAC 
 120       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-181-P1b_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

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Star sequence

Cmi-Mir-181-P1b_3p*

mirBase accession

None

Sequence

41- ACCAUCGAUCGUUGUCUGUACC -63

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