MirGeneDB 2.1
MirGeneDB ID

Sha-Mir-340-v2

Family name MIR-340 (all species)
Seed CAGUCUC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-340
Paralogues Sha-Mir-340-v1 
Orthologues Bta-Mir-340  Cfa-Mir-340  Cpo-Mir-340  Dno-Mir-340  Ete-Mir-340  Hsa-Mir-340  Mdo-Mir-340  Mml-Mir-340  Mmu-Mir-340  Ocu-Mir-340 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(DEVIL_add)		 GL834730.1: 741073-741129 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-340-v2)		 Mir-340-v1 GL834730.1: 741072-741130 [-] UCSC Ensembl
Mir-340-v2 GL834730.1: 741073-741129 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUGGAGAUCUUUAAGAUACAGGGUGUGACUAUAAAGUAAUGAGACUGGUGUUUGUGUGCAGGAUCAGUCUCAUUACUUUAUAGUCAUGCCUUGUAUAUGCUCAUCCUUCAUACUG
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Structure
        10          20        30        40        50        
GACUGGAGAUCUUUAAG--|                                 GUUUGU 
                   AUACAGGGUGUGACUAUAAAGUAAUGAGACUGGU      \
                   UAUGUUCCGUACUGAUAUUUCAUUACUCUGACUA      G
GUCAUACUUCCUACUCGUA^                                 GGACGU 
     110       100        90        80        70        60
Deep sequencing
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CommentThe reverse complement is given in miRBase but the reverse reads are far less abundant than the reads shown here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-340-v2_5p*
mirBase accessionNone
Sequence 
0- CUAUAAAGUAAUGAGACUGGUG -22
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Mature sequence

Sha-Mir-340-v2_3p
mirBase accessionMIMAT0022775
Sequence 
35- UCAGUCUCAUUACUUUAUAGUC -57
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