MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-340-P2

Family name MIR-340 (all species)
Seed UAUAAAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-340-2
Paralogues Rno-Mir-340-P1 
Orthologues Bta-Mir-340  Cfa-Mir-340  Cpo-Mir-340  Dno-Mir-340  Ete-Mir-340  Hsa-Mir-340  Mdo-Mir-340  Mml-Mir-340  Mmu-Mir-340  Ocu-Mir-340 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Theria
Genome context
(rn6)		 chr10: 35571773-35571837 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-340-P2)		 Mir-340-P1 chr10: 35559001-35559065 [+] UCSC Ensembl
Mir-340-P2 chr10: 35571773-35571837 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUCUAAAACCACUUGUACUCGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUGUGUCGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAACACCACAGAUCAUG
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Structure
        10          20        30        40         50        60 
GAUUUCUAAAACCACUU--     C      AU       CAA-|     U    GUCAUGUG 
                   GUACU GGUGUG  UAUAAAG    UGAGAC GAUU        U
                   UAUGG CCAUAC  AUAUUUC    ACUCUG CUAG        C
GUACUAGACACCACAAUUC     U      CG       AUUG^     C    GGUGUUUG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-340-P2_5p
mirBase accessionMIMAT0004650
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
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Star sequence

Rno-Mir-340-P2_3p*
mirBase accessionMIMAT0000585
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
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