Mir-181-P2a

MirGeneDB ID

Mmu-Mir-181-P2a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-181b-1

Paralogues

Mmu-Mir-181-P1a Mmu-Mir-181-P1b Mmu-Mir-181-P1c Mmu-Mir-181-P2b Mmu-Mir-181-P2c

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mun-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr1: 137966650-137966710 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2a)

Mir-181-P1a chr1: 137966468-137966529 [+] UCSC Ensembl
Mir-181-P2a chr1: 137966650-137966710 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGAGACUAUGUUUACAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGAACUGUGUAGAAAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCGCUUUUUGCUGUCGCAAUCA

Get precursor sequence

Structure

        10        20          30        40        50        60 
UCAGAGACUAUGUUUACAAA--|      AUCAA         CUG          GAACUG 
                      GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                      CCGGUGU     GUAAGUAAC   AGUCACUCGA      G
ACUAACGCUGUCGUUUUUCGCC^      CAAC-         A--          AAAGAU 
 .       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Mature sequence

Mmu-Mir-181-P2a_5p

mirBase accession

MIMAT0000673

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000673
TargetScanVert: mmu-miR-181b-5p
miRDB: MIMAT0000673

Star sequence

Mmu-Mir-181-P2a_3p*

mirBase accession

MIMAT0017067

Sequence

40- CUCACUGAACAAUGAAUGCAA -61

Get sequence

Proposed targets

TargetScanVert: mmu-miR-181b-1-3p
miRDB: MIMAT0017067