MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-181-P2a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-181-P1a  Loc-Mir-181-P1b  Loc-Mir-181-P1c  Loc-Mir-181-P2b  Loc-Mir-181-P2c 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Lch-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG10: 12644069-12644129 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGAACAAAUUUCAGCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUGUGUGGAAAAGCUCACUGAACAAUGAAUGCAACUGUGUCCCAGAUUUCAGCCGCUAAUUUCU
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Structure
        10        20          30        40        50        60 
CCCGAACAAAUUUCAGCAAA--| U    AUCAA         CUG          UAACUG 
                      GG CACA     CAUUCAUUG   UCGGUGGGUU      U
                      CC GUGU     GUAAGUAAC   AGUCACUCGA      G
UCUUUAAUCGCCGACUUUAGAC^ U    CAAC-         A--          AAAGGU 
 .       110       100        90         80          70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on the 3p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-181-P2a_5p
mirBase accessionNone
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Loc-Mir-181-P2a_3p*
mirBase accessionNone
Sequence 
40- CUCACUGAACAAUGAAUGCAA -61
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