MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-181-P2a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-181b-1
Paralogues Cpo-Mir-181-P1a  Cpo-Mir-181-P1b  Cpo-Mir-181-P1c  Cpo-Mir-181-P2b 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_12: 23445282-23445342 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P2a)		 Mir-181-P1a scaffold_12: 23445099-23445160 [+] UCSC
Mir-181-P2a scaffold_12: 23445282-23445342 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCAGAUGUUGCAAUUAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGAAUUGUGUGGACAAGCUCACUGGACAAUGAAUGCAACUGUGGCCCCCACUUUUUGCUAUCACAAUC
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Structure
        10        20          30        40        50        60 
GCAGAUGUUGCAAUUAAAAA--|      AUCAA         CUG          GAAUUG 
                      GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                      CCGGUGU     GUAAGUAAC   GGUCACUCGA      G
CUAACACUAUCGUUUUUCACCC^      CAAC-         A--          ACAGGU 
 .       110       100        90         80          70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-181-P2a_5p
mirBase accessionMIMAT0047043
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Cpo-Mir-181-P2a_3p*
mirBase accessionMIMAT0047044
Sequence 
40- CUCACUGGACAAUGAAUGCAA -61
Get sequence