Mir-67-v3

MirGeneDB ID

Dya-Mir-67-v3

Family name

MIR-67 (all species)

Seed

CAACCUC

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-307

Paralogues

Dya-Mir-67-v1 Dya-Mir-67-v2

Orthologues

Asu-Mir-67 Bge-Mir-67 Cbr-Mir-67 Cel-Mir-67 Csc-Mir-67 Cte-Mir-67 Dma-Mir-67 Dme-Mir-67-v3 Dpu-Mir-67 Dsi-Mir-67-v3 Isc-Mir-67 Lan-Mir-67 Lgi-Mir-67 Npo-Mir-67 Obi-Mir-67 Ovu-Mir-67 Sme-Mir-67 Tca-Mir-67-v3

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2L: 18140656-18140721 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-67-v3)

Mir-67-v1 2L: 18140656-18140721 [-] UCSC Ensembl
Mir-67-v2 2L: 18140656-18140721 [-] UCSC Ensembl
Mir-67-v3 2L: 18140656-18140721 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAAAGUUAGCAGCAUUUUGUCUUGCUUUGACUCACUCAACCUGGGUGUGAUGUUAUUUCGAUAUGGUAUCCAUCACAACCUCCUUGAGUGAGCGAUAGCAGGACAGAGUAUCCACGAAACUAACU

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Structure

        10          20         30        40        50        60  
GCAAAGUUAGCAGCAUU--          -|  A         CCU  G     UGUUAUUUCG 
                   UUGUCUUGCU UUG CUCACUCAA   GG UGUGA          A
                   GACAGGACGA AGC GAGUGAGUU   CC ACACU          U
UCAAUCAAAGCACCUAUGA          U^  -         CCU  A     ACCUAUGGUA 
    120       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Wh

Star sequence

Dya-Mir-67-v3_5p*

mirBase accession

None

Sequence

0- ACUCACUCAACCUGGGUGUGA -21

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Mature sequence

Dya-Mir-67-v3_3p

mirBase accession

MIMAT0009054

Sequence

45- ACAACCUCCUUGAGUGAGCGA -66

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