Mir-130-P3b

MirGeneDB ID

Cmi-Mir-130-P3b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-130-P1a Cmi-Mir-130-P1b Cmi-Mir-130-P2a Cmi-Mir-130-P2b Cmi-Mir-130-P3a Cmi-Mir-130-P4a

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Oan-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636009.1: 742939-743003 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACUGUGACUUUUGACACUCAAGUACUGGGACCCUAUCGAUAUUGCCUCUGCUUUGUAGAUGGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUCAGUGCUUGGGAACUUCAACAGUUUGGUGA

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Structure

        10          20        30           40        50        60 
GACUGUGACUUUUGACA--           GG       ---|        CU     UUGUAGA 
                   CUCAAGUACUG  ACCCUAU   CGAUAUUGC  CUGCU       \
                   GGGUUCGUGAC  UGGGAUA   GUUAUAACG  GAUGA       U
AGUGGUUUGACAACUUCAA           UU       UUC^        U-     GUGUCGG 
   120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-130-P3b_5p*

mirBase accession

None

Sequence

0- ACCCUAUCGAUAUUGCCUCUGCU -23

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Mature sequence

Cmi-Mir-130-P3b_3p

mirBase accession

None

Sequence

40- UAGUGCAAUAUUGCUUAUAGGGUUU -65

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