Mir-130-P1a

MirGeneDB ID

Cmi-Mir-130-P1a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-130-P1b Cmi-Mir-130-P2a Cmi-Mir-130-P2b Cmi-Mir-130-P3a Cmi-Mir-130-P3b Cmi-Mir-130-P4a

Orthologues

Aca-Mir-130-P1a Ami-Mir-130-P1a Cli-Mir-130-P1a Cpi-Mir-130-P1a Dre-Mir-130-P1a1 Dre-Mir-130-P1a2 Gga-Mir-130-P1a Gja-Mir-130-P1a Gmo-Mir-130-P1a1 Gmo-Mir-130-P1a2 Lch-Mir-130-P1a Loc-Mir-130-P1a Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mdo-Mir-130-P1a Mun-Mir-130-P1a Oan-Mir-130-P1a Pbv-Mir-130-P1a Sha-Mir-130-P1a Spt-Mir-130-P1a Sto-Mir-130-P1a Tgu-Mir-130-P1a Tni-Mir-130-P1a2 Xla-Mir-130-P1a3 Xla-Mir-130-P1a4 Xtr-Mir-130-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

AAVX02053842.1: 1561-1620 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGUGUGUUAUUUAAGUCUGUUGUCCGGGGCCCUUUUCAUGUUGUACUACUGGGAAGUUGAGUUAAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGUCCUCUCCACCUACCCUACA

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Structure

        10          20        30        40        50         
UGUGUGUGUUAUUUAAGU--|     U    G        C          A  GGGAAG 
                    CUGUUG CCGG GCCCUUUU AUGUUGUACU CU      U
                    GACGGU GGUU CGGGAAAA UAUAACGUGA GA      U
ACAUCCCAUCCACCUCUCCU^     C    A        U          C  AUUGAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-130-P1a_5p*

mirBase accession

None

Sequence

0- GCCCUUUUCAUGUUGUACUACU -22

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Mature sequence

Cmi-Mir-130-P1a_3p

mirBase accession

None

Sequence

38- CAGUGCAAUAUUAAAAGGGCAU -60

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