Mir-130-P2b

MirGeneDB ID

Cmi-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-130-P1a Cmi-Mir-130-P1b Cmi-Mir-130-P2a Cmi-Mir-130-P3a Cmi-Mir-130-P3b Cmi-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cli-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Lch-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636009.1: 739328-739389 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGCUUUGCCUGACCAGCUGCUGACAGACGCUCUGACUUUAUUGCACUACUGUGUUUCACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGGAGGUUGCUCAGAUCGCCAUUGGAGAG

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Structure

        10          20        30           40        50         
GAAGCUUUGCCUGACCA--  U   GA    C   C    U---|         A  GUGUUU 
                   GC GCU  CAGA GCU UGAC    UUAUUGCACU CU      \
                   CG UGG  GUCU CGA ACUG    GAUAACGUGA GA      C
GAGAGGUUACCGCUAGACU  U   AG    A   A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-130-P2b_5p*

mirBase accession

None

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

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Mature sequence

Cmi-Mir-130-P2b_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

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