Mir-67-P6

MirGeneDB ID

Cgi-Mir-67-P6

Family name

MIR-67 (all species)

Seed

CACAACC

Species

Pacific oyster (Crassostrea gigas)

MiRBase ID

Paralogues

Cgi-Mir-67-P4 Cgi-Mir-67-P5

Orthologues

Asu-Mir-67 Bge-Mir-67 Cbr-Mir-67 Cel-Mir-67 Csc-Mir-67 Cte-Mir-67 Dma-Mir-67 Dpu-Mir-67 Isc-Mir-67 Lan-Mir-67 Lgi-Mir-67 Npo-Mir-67 Obi-Mir-67 Ovu-Mir-67 Sme-Mir-67

Node of Origin (locus)

C. gigas

Node of Origin (family)

Protostomia

Genome context
(CGI_GCA_000297895.1)

scaffold226: 224596-224654 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUGACCAUCAGAACUUGUAAAUCACGUGACCUUGUUCGGCCUGGUUGUUAUGUGGACAUGUGACAUCACAACCUGCAUGAAUGAGGGCAUGUGGUUCAAUUCUUUCGACGUAUUCCAU

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Structure

        10        20          30         40        50         
GAUGACCAUCAGAACUUGUA--         A   UG    -| CU      U   UGGAC 
                      AAUCACGUG CCU  UUCG GC  GGUUGU AUG     \
                      UUGGUGUAC GGA  AAGU CG  CCAACA UAC     A
UACCUUAUGCAGCUUUCUUAAC         G   GU    A^ U-      C   AGUGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

A-	D-	D-	Eg	F-	Gi	He	Ju	L-	Ma	Ma	Pe	Re	Sp	Um	Ea	Fe	Ha	La	Ma

Star sequence

Cgi-Mir-67-P6_5p*

mirBase accession

None

Sequence

0- CCUUGUUCGGCCUGGUUGUUAUG -23

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Mature sequence

Cgi-Mir-67-P6_3p

mirBase accession

None

Sequence

36- UCACAACCUGCAUGAAUGAGGGC -59

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