| MirGeneDB ID | Cgi-Mir-67-P4 |
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| Family name |
MIR-67 (all species) |
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| Seed |
ACAACCU |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
Cgi-Mir-67-P5
Cgi-Mir-67-P6
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| Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Csc-Mir-67
Cte-Mir-67
Dma-Mir-67
Dpu-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ovu-Mir-67
Sme-Mir-67
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
Protostomia
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Genome context
(CGI_GCA_000297895.1) |
scaffold146: 102295-102351 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUUAACUUCUUUCUUUUCUGGUUGUGGAACCUUGUUCAGUUGGGUUGUUGCGUGACAGCUACGUUACAACCUGCUUGAAUGAGGCUUGACGACACAGUACCUUCAGCGGCAGACGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAUUAACUUCUUUCUUUU- -| G A UG UU U GUGAC
CUG GUUGU GA CCU UUCAG GGGUUGU GC \
GAC CAGCA UU GGA AAGUU UCCAACA UG A
AGCAGACGGCGACUUCCAU A^ G C GU CG U CAUCG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-67-P4_5p* |
| mirBase accession | None |
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| Sequence |
0- CCUUGUUCAGUUGGGUUGUUGC -22
Get sequence
|
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| Mature sequence |
Cgi-Mir-67-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UACAACCUGCUUGAAUGAGGCU -57
Get sequence
|
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