| MirGeneDB ID | Bla-Mir-242-v1 |
|---|
| Family name |
MIR-242 (all species) |
|---|
| Seed |
GCGUAGG |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-242-v2
|
|---|
| Orthologues |
Bfl-Mir-242
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cgi-Mir-242
Cte-Mir-242
Lan-Mir-242
Npo-Mir-242
Pfl-Mir-242
Pmi-Mir-242
Sko-Mir-242
Spu-Mir-242
|
|---|
| Node of Origin (locus) |
Bilateria
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(BraLan2) |
Sc0000023: 499951-500006 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGGAUUCAGCCAUGAUAGCCGUCCAAGUGUUGCGUAGGCGUUGUGCACACUGUCUGACACAACCGUGUGUACCUCUCCUGCGGCACAUCUGGACGGCAUGUGCGCACAGCCAGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGAUUCAGCCAUGAUA--| AG U - CGUU U CUG
GCCGUCCA UGU GC GUAGG GUGCACAC GU A
CGGCAGGU ACA CG CGUCC CAUGUGUG CA C
GACGACCGACACGCGUGUA^ CU - G UCUC C ACA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Bla-Mir-242-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCGUAGGCGUUGUGCACACUGU -23
Get sequence
|
|---|
| Star sequence |
Bla-Mir-242-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
33- CGUGUGUACCUCUCCUGCGGCAC -56
Get sequence
|
|---|
