| MirGeneDB ID | Xla-Mir-2184-P4 |
|---|
| Family name |
MIR-2184 (all species) |
|---|
| Seed |
ACAGUAA |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-2184-P3
|
|---|
| Orthologues |
Ami-Mir-2184
Cpi-Mir-2184
Gga-Mir-2184
Gmo-Mir-2184
Lch-Mir-2184
Loc-Mir-2184
Mun-Mir-2184
Xtr-Mir-2184
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Gnathostomata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030727.1: 3682375-3682434 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACUCUGCGGUGGCGACUCUGGUGUCUCGGAACAGUAAGAGAUUAUGUGCUGUGUUAUCAGGCAGCCGGCACAUGACUUGUUACUGCUCAGAGAGGCAGGAGGAUUCCUCGCAGGACUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACUCUGCGGUGGCGAC--| G G G A G A UGUUAU
UCU GU UCUC GA CAGUAA AG UUAUGUGCUG C
AGG CG AGAG CU GUCAUU UU AGUACACGGC A
UAUCAGGACGCUCCUUAGG^ A G A C G C CGACGG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on the 3p arm. |
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Mir-2184-P4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AACAGUAAGAGAUUAUGUGCUG -22
Get sequence
|
|---|
| Star sequence |
Xla-Mir-2184-P4_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- GCACAUGACUUGUUACUGCUCA -60
Get sequence
|
|---|
