| MirGeneDB ID | Xla-Mir-2184-P3 |
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| Family name |
MIR-2184 (all species) |
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| Seed |
ACAGUAA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-2184-P4
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| Orthologues |
Ami-Mir-2184
Cpi-Mir-2184
Gga-Mir-2184
Gmo-Mir-2184
Lch-Mir-2184
Loc-Mir-2184
Mun-Mir-2184
Xtr-Mir-2184
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Gnathostomata
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030726.1: 34176601-34176660 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCGGCGGCGGCGGCGACUCUUGCGUCUCGGAACAGUAAGAGAUUAUGUGCUGUGUUAUCAGGCAGCCGGCACAUGGCCUUUUACUGCUCAGAGAGGCAGGAGGAUUCCUCACAGGACUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCGGCGGCGGCGGCGAC--| G G A AU UGUUAU
UCUUGC UCUC GA CAGUAAGAG UAUGUGCUG C
AGGACG AGAG CU GUCAUUUUC GUACACGGC A
UAUCAGGACACUCCUUAGG^ G A C CG CGACGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on the 3p arm. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-2184-P3_5p |
| mirBase accession | None |
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| Sequence |
0- AACAGUAAGAGAUUAUGUGCUG -22
Get sequence
|
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| Star sequence |
Xla-Mir-2184-P3_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
38- GCACAUGGCCUUUUACUGCUCA -60
Get sequence
|
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