Mir-22-P1b1

MirGeneDB ID

Tni-Mir-22-P1b1

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-22a

Paralogues

Tni-Mir-22-P1a Tni-Mir-22-P1b2

Orthologues

Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b1 Hsa-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sha-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Xtr-Mir-22-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

10: 10460516-10460578 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAAGGAAGGCUCGUUGGCCGACCUACAGCAGUUCUUCACUGGCAAGCUUUAUGUCCUCGUGCAACCGCUAAAGCUGCCAGCUGAAGAACUGUUGUGGUCGGCUCUUUCCUGCACCCAAGACG

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Structure

        10           20        30         40        50        60 
GGAAGGAAGGCUCGUUG---|      U              -      A      UGUCCUCG 
                    GCCGACC ACAGCAGUUCUUCA CUGGCA GCUUUA        \
                    CGGCUGG UGUUGUCAAGAAGU GACCGU CGAAAU        U
GCAGAACCCACGUCCUUUCU^      -              C      -      CGCCAACG 
 120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-22-P1b1_5p*

mirBase accession

None

Sequence

0- AGUUCUUCACUGGCAAGCUUUA -22

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Mature sequence

Tni-Mir-22-P1b1_3p

mirBase accession

MIMAT0003100

Sequence

41- AAGCUGCCAGCUGAAGAACUGU -63

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