Mir-22-P1b

MirGeneDB ID

Gga-Mir-22-P1b

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-22

Paralogues

Orthologues

Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Esc-Mir-22-P1 Ete-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Hsa-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sha-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

19: 5528034-5528096 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCUCUGCCCGCUCCUGGCUGCCCGGCAGCAGUUCUUCAGUGGCAAGCUUUAUGUCCUUCUCUAGUAGCUAAAGCUGCCAGUUGAAGAACUGUUGAAUGUAGCCACGUUCAUCGCUGCAAUGU

Get precursor sequence

Structure

        10           20        30        40         50        60 
CCCUCUGCCCGCUCCUG---|    CCGG              -     A      UGUCCUUC 
                    GCUGC    CAGCAGUUCUUCAG UGGCA GCUUUA        \
                    CGAUG    GUUGUCAAGAAGUU ACCGU CGAAAU        U
UGUAACGUCGCUACUUGCAC^    UAA-              G     -      CGAUGAUC 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-22-P1b_5p*

mirBase accession

MIMAT0007287

Sequence

0- AGUUCUUCAGUGGCAAGCUUUA -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-22-5p
miRDB: MIMAT0007287

Mature sequence

Gga-Mir-22-P1b_3p

mirBase accession

MIMAT0007288

Sequence

41- AAGCUGCCAGUUGAAGAACUGU -63

Get sequence

Proposed targets

TargetScanVert: gga-miR-22-3p
miRDB: MIMAT0007288