| MirGeneDB ID | Sme-Bantam-P18 |
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| Family name |
BANTAM (all species) |
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| Seed |
GAGAUCA |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-bantam-a
|
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| Paralogues |
Sme-Bantam-P19
Sme-Bantam-P20
|
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| Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
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| Node of Origin (locus) |
S. mediterranea
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000048_dd_Smes_g4_48: 1523214-1523273 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGAAAAUUCGGUAAGAUUUUGUCAUCAUAUUGGUUUUACUAGUGAUCUAAGAAUGAUAUAUAAAAAUCUGAGAUCACUAUGAAAGCUGGUAAAAUGACAGUGGGCAACAUCAAAGUUUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAAAUUCGGUAAGAUU--| CA UG AC A AUGAUA
UUGUCAU UAU GUUUU UAGUGAUCU AGA U
GACAGUA AUG CGAAA AUCACUAGA UCU A
AAUUUGAAACUACAACGGGU^ AA GU GU G AAAAAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Bantam-P18_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUUUUACUAGUGAUCUAAGA -22
Get sequence
|
|---|
| Mature sequence |
Sme-Bantam-P18_3p |
| mirBase accession | MIMAT0003949 |
|---|
| Sequence |
38- UGAGAUCACUAUGAAAGCUGGU -60
Get sequence
|
|---|
