MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-221
Paralogues Rno-Mir-221-P1a 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pbv-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chrX: 3684504-3684566 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a)		 Mir-221-P1a chrX: 3683940-3684003 [+] UCSC Ensembl
Mir-221-P2a chrX: 3684504-3684566 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGCUGAAUAUCCAGGUCUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAGCAUUUCUCCAUUGGCC
Get precursor sequence
Structure
        10        20           30        40        50        60  
GCAGGCUGAAUAUCCAGG  UG  --  A  -|   UG   U         AUUU    GUUUG 
                  UC  GG  GC UG AACC  GCA ACAAUGUAG    CUGU     U
                  AG  CC  CG AC UUGG  CGU UGUUACAUC    GACA     U
CCGGUUACCUCUUUACGA  GU  AU  G  U^   GU   C         ----    ACGGA 
 120       110       100        90        80            70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-221-P2a_5p*
mirBase accessionMIMAT0017163
Sequence 
0- ACCUGGCAUACAAUGUAGAUUUCUGU -26
Get sequence
Proposed targets TargetScanVert: rno-miR-221-5p
miRDB: MIMAT0017163
Mature sequence

Rno-Mir-221-P2a_3p
mirBase accessionMIMAT0000890
Sequence 
40- AGCUACAUUGUCUGCUGGGUUUC -63
Get sequence
Proposed targets microrna.org: MIMAT0000890
TargetScanVert: rno-miR-221-3p
miRDB: MIMAT0000890