Mir-219-P3

MirGeneDB ID

Rno-Mir-219-P3

Family name

MIR-219 (all species)

Seed

GAUUGUC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-219a-1

Paralogues

Rno-Mir-219-P2 Rno-Mir-219-P2-as

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Lch-Mir-219-P3 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Obi-Mir-219 Ocu-Mir-219-P3 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Sha-Mir-219-P3 Sko-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr20: 3816184-3816247 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUCUCUCCCUGUCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUCUGGCUCCGGCCGAGAGUUGCGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGGGGGAGAG

Get precursor sequence

Structure

        10           20        30        40        50        60 
GCUUCUCUCCCUGUCCC---|   C       CU   U     A            AGUCUCU 
                    GGGC GCGGCUC  GAU GUCCA ACGCAAUUCUCG       G
                    CCCG CGCCGAG  CUG CAGGU UGCGUUGAGAGC       G
GAGAGGGGGAGCUCCAAACC^   C       CC   -     C            CGGCCUC 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-219-P3_5p

mirBase accession

MIMAT0000889

Sequence

0- UGAUUGUCCAAACGCAAUUCUCG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000889
TargetScanVert: rno-miR-219a-5p
miRDB: MIMAT0000889

Co-mature sequence

Rno-Mir-219-P3_3p

mirBase accession

MIMAT0004741

Sequence

41- AGAGUUGCGUCUGGACGUCCCGA -64

Get sequence

Proposed targets

microrna.org: MIMAT0004741
TargetScanVert: rno-miR-219a-1-3p
miRDB: MIMAT0004741