| MirGeneDB ID | Lch-Mir-219-P3 |
|---|---|
| Family name | MIR-219 (all species) |
| Seed | GAUUGUC |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-219-P2 |
| Orthologues | Aae-Mir-219 Aca-Mir-219-P3 Ami-Mir-219-P3 Bfl-Mir-219 Bge-Mir-219 Bla-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cgi-Mir-219 Cin-Mir-219 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Hsa-Mir-219-P3 Isc-Mir-219 Lan-Mir-219 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mml-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mun-Mir-219-P3-v1 Mun-Mir-219-P3-v2 Obi-Mir-219 Ocu-Mir-219-P3 Ovu-Mir-219 Pbv-Mir-219-P3 Pfl-Mir-219 Pmi-Mir-219 Rno-Mir-219-P3 Sha-Mir-219-P3 Sko-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sto-Mir-219-P3-v1 Sto-Mir-219-P3-v2 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Xbo-Mir-219 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH127214.1: 746139-746204 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | GCCAGAGACGCAGUUGGGAAUUUUAGCUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUUCUCAGAUCCAAACCAAGAAUUGUGUCUGGACAUCCUGAGCUGGAAUUUCAAAUCUUCCAAGAAAUGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCCAGAGACGCAGUUGG--| CU U A UGUCUUCUC GAAUUUUAGCUC GAU GUCCA ACGCAAUUCUUG \ UUUAAGGUCGAG CUA CAGGU UGUGUUAAGAAC A UGUAAAGAACCUUCUAAAC^ UC - C CAAACCUAG 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-219-P3_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
|
| Co-mature sequence | Lch-Mir-219-P3_3p (predicted) |
| mirBase accession | None |
| Sequence |
44- AGAAUUGUGUCUGGACAUCCUG -66
Get sequence
|
