Mir-193-P2b

MirGeneDB ID

Rno-Mir-193-P2b

Family name

MIR-193 (all species)

Seed

AAUGCCC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-365

Paralogues

Rno-Mir-193-P1a Rno-Mir-193-P1b Rno-Mir-193-P2a

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2b Cgi-Mir-193-P2 Cli-Mir-193-P2b Cmi-Mir-193-P2b Cpi-Mir-193-P2b Cpo-Mir-193-P2b Cte-Mir-193-P2 Dno-Mir-193-P2b Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Ete-Mir-193-P2b Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hsa-Mir-193-P2b Lch-Mir-193-P2b Lgi-Mir-193-P2 Loc-Mir-193-P2b Mal-Mir-193-P2b2 Mml-Mir-193-P2b Mmu-Mir-193-P2b Mun-Mir-193-P2b Oan-Mir-193-P2b Ocu-Mir-193-P2b Pbv-Mir-193-P2b Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Sha-Mir-193-P2b Sko-Mir-193-P2 Spt-Mir-193-P2b Spu-Mir-193-P2 Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr10: 67079811-67079871 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P2b)

Mir-193-P1b chr10: 67065915-67065970 [+] UCSC Ensembl
Mir-193-P2b chr10: 67079811-67079871 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGAGCAUUCGAGGACAGCAAGAAAAAUGAGGGACUUUCAGGGGCAGCUGUGUUUCCUGACUCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAGUGUGCAUCGGGGCAGCCAU

Get precursor sequence

Structure

        10           20        30        40        50        60
GGAGAGCAUUCGAGGACA---|      A        AC   C       GC    UUUCCU 
                     GCAAGAA AAUGAGGG  UUU AGGGGCA  UGUG      G
                     CGUUCUU UUAUUCCU  AAA UCCCCGU  AUAC      A
UACCGACGGGGCUACGUGUGA^      G        AA   -       A-    UGACUC 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-193-P2b_5p*

mirBase accession

MIMAT0017184

Sequence

0- AGGGACUUUCAGGGGCAGCUGUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-365-5p
miRDB: MIMAT0017184

Mature sequence

Rno-Mir-193-P2b_3p

mirBase accession

MIMAT0001549

Sequence

39- UAAUGCCCCUAAAAAUCCUUAU -61

Get sequence

Proposed targets

microrna.org: MIMAT0001549
TargetScanVert: rno-miR-365-3p
miRDB: MIMAT0001549