Mir-148-P1

MirGeneDB ID

Rno-Mir-148-P1

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-148a

Paralogues

Rno-Mir-148-P3 Rno-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr4: 81013284-81013343 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAAGACAGCCAGUUUGGUCUUUUGAGACAAAGUUCUGAGACACUCUGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUGUGGACGUCGCCUCCCAGC

Get precursor sequence

Structure

        10          20        30         40        50         
AGGAAGACAGCCAGUUU--       U              -| ACACU      CUGAGU 
                   GGUCUUU GAGACAAAGUUCUG AG     CUGACU      A
                   UCGGAGA CUCUGUUUCAAGAC UC     GACUGA      U
CGACCCUCCGCUGCAGGUG       U              A^ ACGU-      AGAUAG 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-148-P1_5p*

mirBase accession

MIMAT0035724

Sequence

0- AAAGUUCUGAGACACUCUGACU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-148a-5p
miRDB: MIMAT0035724

Mature sequence

Rno-Mir-148-P1_3p

mirBase accession

MIMAT0035725

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-148a-3p
miRDB: MIMAT0035725