| MirGeneDB ID | Pfl-Mir-4830-P5 |
|---|
| Family name |
MIR-4830 (all species) |
|---|
| Seed |
CUCUUGA |
|---|
| Species |
Ptychodera (Ptychodera flava) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pfl-Mir-4830-P6
Pfl-Mir-4830-P7
Pfl-Mir-4830-P8
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
P. flava
|
|---|
| Node of Origin (family) |
Enteropneusta
|
|---|
Genome context
(Pfl) |
LD353158.1: 295072-295133 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGCCAAGAUUAGAAAUUGAGUGUUAUGGUGUCUCUUGAGAGCCAUAUGGAGGAGUUAACGGUGAUAGUUCCUCCGUAGGCUUUCAGGAAAUACCAUUUCGCUUCAUGAUUGUCCGGUUGUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGCCAAGAUUAGAAAUU--| UU C A AGUUAACG
GAGUG AUGGUGU UCUUGAGAGCC UAUGGAGG \
UUCGC UACCAUA AGGACUUUCGG AUGCCUCC G
CGUGUUGGCCUGUUAGUAC^ UU A - UUGAUAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pfl-Mir-4830-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCUCUUGAGAGCCAUAUGGAGG -22
Get sequence
|
|---|
| Star sequence |
Pfl-Mir-4830-P5_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
41- UCCGUAGGCUUUCAGGAAAUA -62
Get sequence
|
|---|
