| MirGeneDB ID | Ovu-Novel-20-P1 |
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| Family name |
COL-NOVEL-20 (all species) |
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| Seed |
UCGGGAG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Novel-20-P2
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| Orthologues |
Esc-Novel-20
Obi-Novel-20-P1
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| Node of Origin (locus) |
Octopus
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01008960.1: 6297-6357 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAAAAGGCUGUAUAAAUUGCAUGCACAGUCAUCUGACUUAACUCCUGCAAGGCUAAUUAAAACACAUCCUCGGGAGAGAAGUGAGAUGGCGUGCAUUAGCUUUCGAAACUUCAACAAGGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAAAAGGCUGUAUAAAUU- --| A G AA CA CUAAUUA
GC AUGCAC GUCAUCU ACUU CUCCUG AGG \
CG UACGUG CGGUAGA UGAA GAGGGC UCC A
AGGAACAACUUCAAAGCUUU AU^ - G GA -- UACACAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-20-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCUGACUUAACUCCUGCAAGGC -24
Get sequence
|
|---|
| Mature sequence |
Ovu-Novel-20-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CUCGGGAGAGAAGUGAGAUGGC -61
Get sequence
|
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