| MirGeneDB ID | Obi-Novel-20-P1 |
|---|
| Family name |
COL-NOVEL-20 (all species) |
|---|
| Seed |
UCGGGAG |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Obi-Novel-20-P2
|
|---|
| Orthologues |
Esc-Novel-20
Ovu-Novel-20-P1
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ416676: 200240-200300 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAAAAAGAUGUAUAAAUUGCAUGCACAGUCAUCUGACUUAACUCCUGCAAGGCUAAUCAAAACACAUCCUCGGGAGAGAAGUGAGAUGGCGUGCAUUAGCUUUCGAAACUUCAACAUGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAAAAAGAUGUAUAAAUU- --| A G AA CA CUAAUCA
GC AUGCAC GUCAUCU ACUU CUCCUG AGG \
CG UACGUG CGGUAGA UGAA GAGGGC UCC A
AGGUACAACUUCAAAGCUUU AU^ - G GA -- UACACAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-20-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCUGACUUAACUCCUGCAAGGC -24
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-20-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CUCGGGAGAGAAGUGAGAUGGC -61
Get sequence
|
|---|
