Mir-8-P2b

MirGeneDB ID

Ocu-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-141

Paralogues

Ocu-Mir-8-P1a Ocu-Mir-8-P1b Ocu-Mir-8-P2a Ocu-Mir-8-P3a

Orthologues

Aae-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2b Cgi-Mir-8 Cin-Mir-8-P2 Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Hme-Mir-8 Hsa-Mir-8-P2b Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Mdo-Mir-8-P2b Mml-Mir-8-P2b Mmu-Mir-8-P2b Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ovu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P2b Sha-Mir-8-P2b Sko-Mir-8 Spu-Mir-8 Tca-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

chr8: 32967353-32967417 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P1b chr8: 32966987-32967049 [+] UCSC Ensembl
Mir-8-P2b chr8: 32967353-32967417 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUGUUCCCACAACUGGCCGGCUCUGGGCCCAUCUUCCAGCACAGUGUUGGAUGGUCUACUUGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGUCGGCUUCCUCGGCAGUGACCUU

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Structure

        10          20        30          40        50        60 
GGUGUUCCCACAACUGG--       U   C       --|   C          AUGGUCUAC 
                   CCGGCUC GGG CCAUCUU  CCAG ACAGUGUUGG         U
                   GGCUGGG CCC GGUAGAA  GGUC UGUCACAAUC         U
UUCCAGUGACGGCUCCUUC       C   C       AU^   -          CUCGAAGUG 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-8-P2b_5p*

mirBase accession

MIMAT0048243

Sequence

0- CAUCUUCCAGCACAGUGUUGGA -22

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Mature sequence

Ocu-Mir-8-P2b_3p

mirBase accession

MIMAT0048244

Sequence

42- UAACACUGUCUGGUAAAGAUGGC -65

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