Mir-8-P2b

MirGeneDB ID

Hsa-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-141

Paralogues

Hsa-Mir-8-P1a Hsa-Mir-8-P1b Hsa-Mir-8-P2a Hsa-Mir-8-P3a

Orthologues

Aae-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2b Cgi-Mir-8 Cin-Mir-8-P2 Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Hme-Mir-8 Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Mdo-Mir-8-P2b Mml-Mir-8-P2b Mmu-Mir-8-P2b Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2b Ovu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P2b Sha-Mir-8-P2b Sko-Mir-8 Spu-Mir-8 Tca-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr12: 6964113-6964177 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P1b chr12: 6963703-6963764 [+] UCSC Ensembl
Mir-8-P2b chr12: 6964113-6964177 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGUAGUUCUCUGUCGGCCGGCCCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAAUUGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCUCCCGGGUGGGUUCUCUCGGCAGUAACCUU

Get precursor sequence

Structure

        10          20         30          40        50        60 
CCGUAGUUCUCUGUCGG--  G    U   U-       --|   U          AUGGUCUAA 
                   CC GCCC GGG  CCAUCUU  CCAG ACAGUGUUGG         U
                   GG UGGG CCC  GGUAGAA  GGUC UGUCACAAUC         U
UUCCAAUGACGGCUCUCUU  G    -   UC       AU^   -          CUCGAAGUG 
   120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-8-P2b_5p*

mirBase accession

MIMAT0004598

Sequence

0- CAUCUUCCAGUACAGUGUUGGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004598
TargetScanVert: hsa-miR-141-5p
TargetMiner: hsa-miR-141-5p
miRDB: MIMAT0004598

Mature sequence

Hsa-Mir-8-P2b_3p

mirBase accession

MIMAT0000432

Sequence

42- UAACACUGUCUGGUAAAGAUGGC -65

Get sequence

Proposed targets

microrna.org: MIMAT0000432
TargetScanVert: hsa-miR-141-3p
TargetMiner: hsa-miR-141-3p
miRDB: MIMAT0000432