| MirGeneDB ID | Obi-Novel-35-v2 |
|---|
| Family name |
COL-NOVEL-35 (all species) |
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| Seed |
UCCGCGA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Obi-Novel-35-v1
Obi-Novel-35-v3
|
|---|
| Orthologues |
Esc-Novel-35-v2
Ovu-Novel-35-v2
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ418194: 2426000-2426058 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCCUUUUUUAUUUAUCCAUUGCAGUUGUUAUACGAACAAGUGGCUGUCGGUUGAAUUUUACACACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAACUUUCGUCUGGCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCCUUUUUUAUUUAUCCA-----| AGUUG G GC U U AAUUU
UUGC UUAUAC AACAAGUG UG CGG UG \
AACG AGUAUG UUGUUCAC GC GCC AC U
UUCGGUCUGCUUUCAAGGUGCGCA^ GA--- - UA - U ACACA
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-35-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUACGAACAAGUGGCUGUCGGUUGA -25
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-35-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AUCCGCGAUCACUUGUUGUAUGA -59
Get sequence
|
|---|
