| MirGeneDB ID | Ovu-Novel-35-v2 |
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| Family name |
COL-NOVEL-35 (all species) |
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| Seed |
UCCGCGA |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Novel-35-v1
Ovu-Novel-35-v3
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| Orthologues |
Esc-Novel-35-v2
Obi-Novel-35-v2
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01029033.1: 2111-2167 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUCUUUUUAUUAUCCAUUGCAGUUGUUAUACGAACAAGUGGCUGUCGGUUGAAUUUUACACACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAACUUUCGUCUGGUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUCUUUUUAUUAUCCA-------| AGUUG G GC U U AAUUU
UUGC UUAUAC AACAAGUG UG CGG UG \
AACG AGUAUG UUGUUCAC GC GCC AC U
UUUGGUCUGCUUUCAAGGUGCGCA^ GA--- - UA - U ACACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-35-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACGAACAAGUGGCUGUCGGUUGA -23
Get sequence
|
|---|
| Mature sequence |
Ovu-Novel-35-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
34- AUCCGCGAUCACUUGUUGUAUGA -57
Get sequence
|
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