Mir-19-P2a

MirGeneDB ID

Mmu-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-19b-1

Paralogues

Mmu-Mir-19-P1a Mmu-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr14: 115044320-115044380 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a)

Mir-17-P1a chr14: 115043684-115043743 [+] UCSC Ensembl
Mir-17-P2a chr14: 115043867-115043931 [+] UCSC Ensembl
Mir-19-P1a chr14: 115044013-115044070 [+] UCSC Ensembl
Mir-17-P4a chr14: 115044183-115044241 [+] UCSC Ensembl
Mir-19-P2a chr14: 115044320-115044380 [+] UCSC Ensembl
Mir-92-P1a chr14: 115044437-115044497 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUCCUGUUAUUGAGCACUGGUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUAAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGAAAAGUCUGUAGAGAAGUA

Get precursor sequence

Structure

        10        20          30         40         50          
UGUCCUGUUAUUGAGCACUGGU--                 -  -|     UC    UGUAUA 
                        CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                        GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUGAAGAGAUGUCUGAAAAGUGGU                 A  U^     --    UCUUAU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-19-P2a_5p*

mirBase accession

MIMAT0017065

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Proposed targets

TargetScanVert: mmu-miR-19b-1-5p
miRDB: MIMAT0017065

Mature sequence

Mmu-Mir-19-P2a_3p

mirBase accession

MIMAT0000513

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

Get sequence

Proposed targets

microrna.org: MIMAT0000513
TargetScanVert: mmu-miR-19b-3p
miRDB: MIMAT0000513