Mir-15-P2b

MirGeneDB ID

Mmu-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-16-2

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2c Mmu-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mun-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chr3: 69009918-69009982 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P1b chr3: 69009775-69009834 [+] UCSC Ensembl
Mir-15-P2b chr3: 69009918-69009982 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUGGAUAUCUGACAUGCUUGUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGACAGGGAUAUAGCAACUCAUUUCUG

Get precursor sequence

Structure

        10          20        30        40        50        60  
GUUUGGAUAUCUGACAUG--|    UC    CU         UA        C  AGUGAAAU 
                    CUUGU  CACU  AGCAGCACG  AAUAUUGG GU        \
                    GGACA  GUGA  UCGUCGUGU  UUAUAACC CA        A
GUCUUUACUCAACGAUAUAG^    GU    UU         UA        A  AAUUAUAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Mature sequence

Mmu-Mir-15-P2b_5p

mirBase accession

MIMAT0000527

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000527
TargetScanVert: mmu-miR-16-5p
miRDB: MIMAT0000527

Star sequence

Mmu-Mir-15-P2b_3p*

mirBase accession

MIMAT0017018

Sequence

42- ACCAAUAUUAUUGUGCUGCUUUA -65

Get sequence

Proposed targets

TargetScanVert: mmu-miR-16-2-3p
miRDB: MIMAT0017018