| MirGeneDB ID | Loc-Mir-27-P1 |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
UCACAGU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-27-P2
Loc-Mir-27-P3
Loc-Mir-27-P4
|
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| Orthologues |
Dre-Mir-27-P1
Gmo-Mir-27-P1
Lch-Mir-27-P1
Mal-Mir-27-P1
Pma-Mir-27-o1
Tni-Mir-27-P1
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG10: 2475632-2475694 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGACGGGGCAGCUGAGUUUUGUGAGGUGCAGGACUUAGCUCGCUUUGUGAACAGAUUUUGAAAAUCCCAUGUUCACAGUGGCUAAGUUCCGCUCCUCUGAAGCUGAUUUUCCUCAACAAUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGACGGGGCAGCUGAGUUUUGU--| U A U UU GAUUUUG
GAGG GC GGACUUAGC CGCU GUGAACA A
CUCC CG CUUGAAUCG GUGA CACUUGU A
AGUAACAACUCCUUUUAGUCGAAGU^ U C - -- ACCCUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-27-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGACUUAGCUCGCUUUGUGAACA -24
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-27-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCCGC -63
Get sequence
|
|---|
