| MirGeneDB ID | Tni-Mir-27-P1 |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
UCACAGU |
|---|
| Species |
Pufferfish (Tetraodon nigroviridis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Tni-Mir-27-P2b
Tni-Mir-27-P3
Tni-Mir-27-P4a
Tni-Mir-27-P4b
|
|---|
| Orthologues |
Dre-Mir-27-P1
Gmo-Mir-27-P1
Lch-Mir-27-P1
Loc-Mir-27-P1
Mal-Mir-27-P1
Pma-Mir-27-o1
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15_random: 3094204-3094266 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUGUGUGUGUCCUGAGUUUGAGAGAGGGGCAGGACUUGGCUCGCUCCGUGAACAGUUCGGUCAGUGUGAGUGUUCACAGUGGCUAAGUUCCGCUCCUCACAAGCUUUACCAGCGUCCCACCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUGUGUGUCCUGAGUUUGAGA--| A U CC GUUCGGU
GAGGGGC GGACUUGGC CGCU GUGAACA C
CUCCUCG CUUGAAUCG GUGA CACUUGU A
CUCCACCCUGCGACCAUUUCGAACA^ C - -- GAGUGUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Tni-Mir-27-P1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGACUUGGCUCGCUCCGUGAACA -24
Get sequence
|
|---|
| Mature sequence |
Tni-Mir-27-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCCGC -63
Get sequence
|
|---|
