| MirGeneDB ID | Loc-Mir-24-P1 |
|---|
| Family name |
MIR-24 (all species) |
|---|
| Seed |
GGCUCAG |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Loc-Mir-24-P2
Loc-Mir-24-P3
Loc-Mir-24-P4
|
|---|
| Orthologues |
Dre-Mir-24-P1
Gmo-Mir-24-P1
Lch-Mir-24-P1
Pma-Mir-24-o1
Sto-Mir-24-P1
Tni-Mir-24-P1
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(LepOcu1) |
LG10: 2473205-2473264 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAGGAAGCAAGCAAAUGGGCUCCAUCUCCAGUGCCUACUGAGCUGAUUACAGUUGAUUUAUUGAGCACUGGCUCAGUUCAGCAGGAACCGGAGUUCUGCCUCUUAAUACACGGAUCCCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGGAAGCAAGCAAAUG---| UCCAU A G A UUA UGAUUU
GGC CUCC GU CCU CUGAGCUGA CAGU \
CCG GAGG CA GGA GACUUGACU GUCA A
AACCCUAGGCACAUAAUUCU^ UCUU- C A C CG- CGAGUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-24-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUGCCUACUGAGCUGAUUACAGU -23
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-24-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGGCUCAGUUCAGCAGGAACCG -60
Get sequence
|
|---|
