| MirGeneDB ID | Loc-Mir-24-P4 |
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| Family name |
MIR-24 (all species) |
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| Seed |
GGCUCAG |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-24-P1
Loc-Mir-24-P2
Loc-Mir-24-P3
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| Orthologues |
Dre-Mir-24-P4a
Gmo-Mir-24-P4a
Gmo-Mir-24-P4b
Lch-Mir-24-P4
Mal-Mir-24-P4a
Mal-Mir-24-P4b
Sto-Mir-24-P4
Tni-Mir-24-P4a
Tni-Mir-24-P4b
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG19: 5781223-5781282 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GACAUGUUGCUGCUGGGGCUGUGACCUCCCGUGCCUACUGAACUGAUAUCAGUGUGUGUACGGAAUACUGGCUCAGUUCAGCAGGAACAGGAGUUAAGCCCAACUGUACACCAUUACCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACAUGUUGCUGCUGGG----| G C C G A UA UGUGUGU
GCU UGAC UCC GU CCU CUGAACUGA UCAG \
CGA AUUG AGG CA GGA GACUUGACU GGUC A
CUCCAUUACCACAUGUCAACC^ - - A A C C- AUAAGGC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
Yes
|
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| Motifs | UGUG in loop |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-24-P4_5p* |
| mirBase accession | None |
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| Sequence |
0- GUGCCUACUGAACUGAUAUCAG -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-24-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|
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