Mir-23-P4

MirGeneDB ID

Loc-Mir-23-P4

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-23-P1 Loc-Mir-23-P2

Orthologues

Cmi-Mir-23-P4 Dre-Mir-23-P4a Gmo-Mir-23-P4a Lch-Mir-23-P4 Mal-Mir-23-P4a Sto-Mir-23-P4 Tni-Mir-23-P4a Xla-Mir-23-P4c Xla-Mir-23-P4d Xtr-Mir-23-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG19: 5779627-5779689 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GGUUAACCACUAGUCUGGCUGUAUCGGAGAGGGUUCCUGGCACCGUGAUUUGAUGCAAAAACAGAAACCAAAAUCACAUUGCCAGGGAUUUCCACUCUGUUACAGGUUGCUCCUUCGGGCUGU

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Structure

        10        20        30          40        50        60 
GGUUAACCACUAGUCUGG     U     A  --|         CC       GAUGCAAAA 
                  CUGUA CGGAG GG  GUUCCUGGCA  GUGAUUU         \
                  GACAU GUCUC CC  UAGGGACCGU  CACUAAA         A
UGUCGGGCUUCCUCGUUG     U     A  UU^         UA       ACCAAAGAC 
 120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-23-P4_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCACCGUGAUUU -21

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Mature sequence

Loc-Mir-23-P4_3p

mirBase accession

None

Sequence

42- AUCACAUUGCCAGGGAUUUCC -63

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