| MirGeneDB ID | Loc-Mir-23-P1 |
|---|
| Family name |
MIR-23 (all species) |
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| Seed |
UCACAUU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
|
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| Paralogues |
Loc-Mir-23-P2
Loc-Mir-23-P4
|
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| Orthologues |
Dre-Mir-23-P1
Gmo-Mir-23-P1
Lch-Mir-23-P1
Mal-Mir-23-P1
Pma-Mir-23-o1
Sto-Mir-23-P1
Tni-Mir-23-P1
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG10: 2478694-2478751 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUCAAGACACGCACUUGCUGAAGUUGGAGGGAUUCCUGGCAGAGUGAUUUGGUUUUAUGUAAUAAAAUCACAUUGCCAGGGAUUUCCAACCAGCUGCAAGCCAGACUUCAAUGCCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUCAAGACACGCACUU------| AA GG A GGUUUU
GCUG GUUGGA GAUUCCUGGCAG GUGAUUU A
CGAC CAACCU UUAGGGACCGUU CACUAAA U
UCCCGUAACUUCAGACCGAACGU^ -- -- A AUAAUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
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Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-23-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGAUUCCUGGCAGAGUGAUUU -21
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-23-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AUCACAUUGCCAGGGAUUUCC -58
Get sequence
|
|---|
