| MirGeneDB ID | Loc-Mir-19-P2d |
|---|
| Family name |
MIR-19 (all species) |
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| Seed |
GUGCAAA |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-19-P1a
Loc-Mir-19-P2a
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| Orthologues |
Cmi-Mir-19-P2d
Dre-Mir-19-P2d
Gmo-Mir-19-P2d
Lch-Mir-19-P2d
Mal-Mir-19-P2d
Mun-Mir-19-P2d
Tni-Mir-19-P2d
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG2: 57217593-57217657 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCUCUCUCUUUUGCCCUGCGGGUCCCAGUCAGCUUUGCAGGGUUGCAGUCAGCCUGUGCCUGUCAGUGCCGCUGUGCAAACCCAUGCAAAACUGACUGUGGCUGGUGCCGCCUCCUCUCGCCUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUCUCUCUUUUGCCCU-- G C C - -| GU CUGUGCCU
GC GGUC CAGUCAG UUUGCA GGG UUGCA CAGC \
UG UCGG GUCAGUC AAACGU CCC AACGU GUCG G
CGUCCGCUCUCCUCCGCCG G U A A A^ -- CCGUGACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-19-P2d_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUUUGCAGGGUUGCAGUCAGC -23
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-19-P2d_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UGUGCAAACCCAUGCAAAACUGA -65
Get sequence
|
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