| MirGeneDB ID | Mal-Mir-19-P2d |
|---|
| Family name |
MIR-19 (all species) |
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| Seed |
GUGCAAA |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-19-P1a2
Mal-Mir-19-P2a1
Mal-Mir-19-P2a2
|
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| Orthologues |
Cmi-Mir-19-P2d
Dre-Mir-19-P2d
Gmo-Mir-19-P2d
Lch-Mir-19-P2d
Loc-Mir-19-P2d
Mun-Mir-19-P2d
Tni-Mir-19-P2d
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV885025.1: 88524-88590 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUAUUGUAAGAGGCUUUUCUGACCCUGGCCAGCUUUGCAGGGUGGGCAGUCAGCCUGUGUGCGUUAGGAGCAGCUGUGCAAACCCAUGCAAAACUGACCAUGGCUGGAGUUGUCAUCAGUAUAUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUAUUGUAAGAGGCUUU-- GA C C C -| GG GU CUGUGUGC
UCU CC UGG CAG UUUGCA GGGU GCA CAGC G
AGG GG ACC GUC AAACGU CCCA CGU GUCG U
UUUUAUAUGACUACUGUUG UC U A A A^ AA -- ACGAGGAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Mal-Mir-19-P2d_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUUUGCAGGGUGGGCAGUCAGC -24
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-19-P2d_3p |
| mirBase accession | None |
|---|
| Sequence |
44- UGUGCAAACCCAUGCAAAACUGA -67
Get sequence
|
|---|
