MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-19-P2a  Loc-Mir-19-P2d 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG17: 12376281-12376338 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAUGGGGUUUUUUUGCAGAUCUCUGCUAGUUUUGCAUAGUUGCACUACAAGAAAAAUUGAGUUGUGCAAAACUAUGCAAAACUGAUGGUGGCCUGCUUUAUCUCCACCUGUUUAA
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Structure
        10          20        30        40          50       
UUUUAUGGGGUUUUUUU--    AU U  GC              --|    U  AAGAA 
                   GCAG  C CU  UAGUUUUGCAUAGU  UGCAC AC     A
                   CGUC  G GG  GUCAAAACGUAUCA  ACGUG UG     A
AAUUUGUCCACCUCUAUUU    CG U  UA              AA^    U  AGUUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-19-P1a_5p*
mirBase accessionNone
Sequence 
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Loc-Mir-19-P1a_3p
mirBase accessionNone
Sequence 
35- UGUGCAAAACUAUGCAAAACUGA -58
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