MirGeneDB 2.1
MirGeneDB ID

Isc-Mir-275

Family name MIR-275 (all species)
Seed CAGGUAC
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-275
Paralogues
Orthologues Aae-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Hme-Mir-275  Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P4-v2  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7  Tca-Mir-275 
Node of Origin (locus) Arthropoda
Node of Origin (family) Arthropoda
Genome context
(IscaWI)		 DS945001: 243256-243318 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-275)		 Mir-305 DS945001: 228273-228337 [-] Ensembl
Mir-275 DS945001: 243256-243318 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACGAGCGGUCUUUCCUCCCGUUGCCUCUACGUGCUGCAUCAGGUGCUUGUGACUACGCGUUCGAAAGUCAGGUACCUGAAGUAGCGCGCGGAAGGCUUCGGGGCUGGUCCAGCGAGUGACG
Get precursor sequence
Structure
        10         20         30        40        50        60  
CAACGAGCGGUCUUUCC-     UU   -| UA        A         UG     ACGCG 
                  UCCCG  GCC UC  CGUGCUGC UCAGGUGCU  UGACU     \
                  GGGGC  CGG AG  GCGCGAUG AGUCCAUGG  ACUGA     U
GCAGUGAGCGACCUGGUC     UU   A^ GC        A         --     AAGCU 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Al Mi Mi Mi Sa Sa Sa Sa To
Star sequence

Isc-Mir-275_5p*
mirBase accessionNone
Sequence 
0- ACGUGCUGCAUCAGGUGCUUGUGACU -26
Get sequence
Mature sequence

Isc-Mir-275_3p
mirBase accessionMIMAT0012693
Sequence 
39- UCAGGUACCUGAAGUAGCGCGCGG -63
Get sequence