Mir-30-P1d

MirGeneDB ID

Hsa-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30e

Paralogues

Hsa-Mir-30-P1a Hsa-Mir-30-P1b Hsa-Mir-30-P2a Hsa-Mir-30-P2b Hsa-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr1: 40754371-40754434 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P1d chr1: 40754371-40754434 [+] UCSC Ensembl
Mir-30-P2d chr1: 40757300-40757360 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCCGUUCUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCGUCCCCAGCUACG

Get precursor sequence

Structure

        10            20        30        40        50        60  
UCUCCGUUCUUUCUGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
GCAUCGACCCCUGCUGGCACC^     --  GC            --           GGAGACU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-30-P1d_5p

mirBase accession

MIMAT0000692

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000692
TargetScanVert: hsa-miR-30e-5p
TargetMiner: hsa-miR-30e-5p
miRDB: MIMAT0000692

Star sequence

Hsa-Mir-30-P1d_3p*

mirBase accession

MIMAT0000693

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence

Proposed targets

microrna.org: MIMAT0000693
TargetScanVert: hsa-miR-30e-3p
TargetMiner: hsa-miR-30e-3p
miRDB: MIMAT0000693