MirGeneDB 2.1
MirGeneDB ID

Hsa-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Human (Homo sapiens)
MiRBase ID hsa-mir-106b
Paralogues Hsa-Mir-17-P1a  Hsa-Mir-17-P1c  Hsa-Mir-17-P2a  Hsa-Mir-17-P2c  Hsa-Mir-17-P4a  Hsa-Mir-17-P4c  Hsa-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(hg38)		 chr7: 100094002-100094063 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d chr7: 100093571-100093630 [-] UCSC Ensembl
Mir-17-P4d chr7: 100093776-100093837 [-] UCSC Ensembl
Mir-17-P1d chr7: 100094002-100094063 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCACCUCCCGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCGUCCGUGGAG
Get precursor sequence
Structure
        10          20        30         40        50          
CCCCACCUCCCGCUCCA--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGACG CCUCG   UUCAUGG UGUCACG            U
GAGGUGCCUGCGACACGCA       A     UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +1 and +2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-17-P1d_5p
mirBase accessionMIMAT0000680
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
Get sequence
Proposed targets microrna.org: MIMAT0000680
TargetScanVert: hsa-miR-106b-5p
TargetMiner: hsa-miR-106b-5p
miRDB: MIMAT0000680
Co-mature sequence

Hsa-Mir-17-P1d_3p
mirBase accessionMIMAT0004672
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence
Proposed targets microrna.org: MIMAT0004672
TargetScanVert: hsa-miR-106b-3p
TargetMiner: hsa-miR-106b-3p
miRDB: MIMAT0004672