Mir-15-P2a

MirGeneDB ID

Hsa-Mir-15-P2a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-16-1

Paralogues

Hsa-Mir-15-P1a Hsa-Mir-15-P1b Hsa-Mir-15-P1c Hsa-Mir-15-P1d Hsa-Mir-15-P2b Hsa-Mir-15-P2c Hsa-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(hg38)

chr13: 50048984-50049048 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P2a chr13: 50048984-50049048 [-] UCSC Ensembl
Mir-15-P1a chr13: 50049130-50049188 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCUUAUGAUAGCAAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGACCAUACUCUACAGUUGUGUU

Get precursor sequence

Structure

        10          20        30         40        50        60 
GCUCUUAUGAUAGCAAU--      AG   C          -| A        CGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CAGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
UUGUGUUGACAUCUCAUAC      GA   A          U^ A        UCUAUUAAAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-15-P2a_5p

mirBase accession

MIMAT0000069

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000069
TargetScanVert: hsa-miR-16-5p
TargetMiner: hsa-miR-16-5p
miRDB: MIMAT0000069

Star sequence

Hsa-Mir-15-P2a_3p*

mirBase accession

MIMAT0004489

Sequence

42- CCAGUAUUAACUGUGCUGCUGAA -65

Get sequence

Proposed targets

microrna.org: MIMAT0004489
TargetScanVert: hsa-miR-16-1-3p
TargetMiner: hsa-miR-16-1-3p
miRDB: MIMAT0004489